Uamx

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Specifically, we assessed its ability to metabolize various carbon sources, its resistance to low pH exposure, and its growth in the presence of bile salts. The genomic and bioinformatic analyses included the prediction of gene and protein metabolic functions, a pan-genome and phylogenomic analysis. Moreover, it showed the ability to metabolize simple and complex carbon sources glucose, starch, carboxymethyl-cellulose, inulin, and tributyrin , showing a differentiated electrophoretic profile. Genome was assembled into a single contig, with a high percentage of genes and proteins associated with the metabolism of amino acids, carbohydrates, and lipids. Antibiotic resistance genes were detected, but only one beta-Lactam resistance protein related to the inhibition of peptidoglycan biosynthesis was identified.

Uamx

Federal government websites often end in. The site is secure. Preview improvements coming to the PMC website in October Learn More or Try it out now. San Rafael Atlixco , Col. Specifically, we assessed its ability to metabolize various carbon sources, its resistance to low pH exposure, and its growth in the presence of bile salts. The genomic and bioinformatic analyses included the prediction of gene and protein metabolic functions, a pan-genome and phylogenomic analysis. Moreover, it showed the ability to metabolize simple and complex carbon sources glucose, starch, carboxymethyl-cellulose, inulin, and tributyrin , showing a differentiated electrophoretic profile. Genome was assembled into a single contig, with a high percentage of genes and proteins associated with the metabolism of amino acids, carbohydrates, and lipids. Antibiotic resistance genes were detected, but only one beta-Lactam resistance protein related to the inhibition of peptidoglycan biosynthesis was identified. Therefore, BP-UAMX seems to be adapted to the intestinal environment, with physiological and genomic analyses demonstrating the ability to metabolize complex carbon sources, the strain has an open pan-genome with continuous evolution and adaptation. Gram-positive Bacillus pumilus are spore-forming bacteria that grow under aerobic or anaerobic conditions. These bacteria have been reported to be found in soil, water, air spores , fermented foods, decomposing plant and animal tissues, and the human gastrointestinal tract GIT.

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Uamx

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Keywords: microbiota, pangenome, phylogenomic and bacillus. Environments shape the nucleotide composition of genomes. Blue E. Adobe InDesign. Figure 1. Secondary metabolites biosynthesis, transport, and catabolism. Food Chem. Medini D. For instance, Bacillus cereus is capable of integrating exogenous free fatty acids into the cell membrane as an adaptation response to low temperatures and anaerobiosis. Following this, a pan-genome tree was built using 30 genomes of B. In general, most genes were associated with starch and sucrose metabolism, gluconeogenesis, tricarboxylic acid cycle, the pentose phosphate pathway, and pyruvate metabolism. Therefore, exposing BP-UAMX to non-glycolytic carbon sources results in new alternatives that should be addressed in the future. Lopetuso L. Copy Download. Most identified functional proteins were associated with the transport of carbohydrates, energy production, as well as to metabolic and structural intermediaries for the increase of cellular biomass, that could be associated with the observed growth and cell production rates in Figure 2 a.

Specifically, we assessed its ability to metabolize various carbon sources, its resistance to low pH exposure, and its growth in the presence of bile salts. The genomic and bioinformatic analyses included the prediction of gene and protein metabolic functions, a pan-genome and phylogenomic analysis. Moreover, it showed the ability to metabolize simple and complex carbon sources glucose, starch, carboxymethyl-cellulose, inulin, and tributyrin , showing a differentiated electrophoretic profile.

Yellow D9CF Therefore, exposing BP-UAMX to non-glycolytic carbon sources results in new alternatives that should be addressed in the future. Omic technologies such as PacBio genome sequencing allow the analysis of the gene expression variation which can provide information in a shorter time frame [ 24 , 25 , 26 , 27 , 28 , 29 , 30 ]. An obesity-associated gut microbiome with increased capacity for energy harvest. Although the purpose of this study was to assess the resistance of BP-UAMX to simulated gastric conditions, the genomic sequencing and bioinformatic analysis revealed alternative metabolic pathways in the UAMX strain that require further study. Lopetuso L. Future Microbiol. Leser T. Green 0D9C Nonetheless, a variation in the experimental conditions may restrict data comparison within researchers [ 54 , 55 , 56 ]. Therefore, the growth of BP-UAMX in the presence of tributyrin may be associated with an adaptation process, since the strain was isolated from the microbiota of individuals that are prone to consuming a diet rich in sugar and fat [ 4 ]. Materials and Methods 2. Table 1 shows the ontology of proteins expressed by Bacillus pumilus UAMX growth on the glucose carbon source control media. Bioprocess Biosyst.